What are the Top 10 Symptoms of Chronic Inflammatory Response Syndrome?
By Dr. Lisa Ballehr
Chronic Inflammatory Response Syndrome (CIRS) is an increasingly recognized, yet still often misunderstood, multi-system condition that disrupts the lives of many patients who go years without a proper diagnosis. For those grappling with persistent fatigue, cognitive difficulties, and seemingly unrelated physical symptoms, CIRS can feel like an invisible barrier to wellness—especially when standard medical evaluations turn up “normal” results. However, when viewed through the comprehensive and individualized framework of functional medicine, CIRS reveals itself as a real, measurable illness with specific triggers and biological patterns that can be addressed effectively.
What Is Chronic Inflammatory Response Syndrome?
CIRS is a chronic condition triggered by prolonged exposure to biotoxins in individuals who are genetically susceptible. These toxins can stem from a variety of environmental sources, including water-damaged buildings containing mold, tick-borne infections like Lyme disease, and even harmful algal blooms with cyanobacteria. In people with certain HLA gene types, the immune system fails to properly recognize and clear these toxins, resulting in a perpetual inflammatory cascade that impacts multiple body systems—neurological, endocrine, immune, and musculoskeletal.
The hallmark of Chronic Inflammatory Response Syndrome is this dysregulated, chronic inflammation that resists resolution, even long after the initial exposure. Rather than resolving like a typical immune response, the inflammation becomes self-perpetuating, giving rise to a constellation of baffling and often debilitating symptoms.
Recognizing the Symptoms of CIRS
One of the biggest challenges in diagnosing CIRS is its vast array of symptoms. These symptoms can mimic other conditions such as fibromyalgia, chronic fatigue syndrome, depression, or autoimmune disorders, making misdiagnosis or dismissal frustratingly common. Here are the top 10 symptoms frequently reported by patients suffering from CIRS:
- Persistent Fatigue and Weakness
A constant, unrelenting exhaustion that isn’t relieved by rest is often the first and most prominent sign. This fatigue is more than feeling “tired”—it affects physical stamina and mental clarity. - Cognitive Impairment and Brain Fog
Difficulty concentrating, short-term memory issues, and a feeling of mental “haze” are frequent complaints. These cognitive disruptions are signs of neuroinflammation, a core feature of CIRS. - Joint and Muscle Pain
Diffuse pain without a clear musculoskeletal cause is common. Unlike injuries or arthritis, this pain tends to migrate and is often described as deep or aching. - Frequent Headaches or Migraines
Many patients report an uptick in headaches, particularly tension-type or migraine-like headaches, often triggered by environmental exposures. - Shortness of Breath or Air Hunger
Difficulty taking a full breath or feeling like you’re not getting enough air—even in the absence of lung disease—can be a symptom tied to inflammation affecting the vascular or autonomic nervous system. - Unexplained Weight Fluctuations
Whether it’s weight gain without dietary changes or difficulty maintaining weight, CIRS can interfere with metabolic regulation. - Increased Sensitivity to Light, Sound, or Chemicals
Heightened reactivity to environmental stimuli is common in Chronic Inflammatory Response Syndrome, reflecting the hypersensitivity of the nervous system under chronic inflammation. - Mood Changes, Anxiety, and Depression
Emotional instability, anxiety, irritability, and depressive symptoms often accompany the physical complaints and are sometimes misinterpreted as purely psychological in origin. - Sleep Disturbances
Difficulty falling asleep, frequent awakenings, or non-restorative sleep can leave individuals feeling just as tired upon waking as they were the night before. - Hormonal Imbalances
Many individuals with CIRS experience dysfunction in adrenal, thyroid, or sex hormones, contributing to further fatigue, mood changes, and weight issues.
If you’re experiencing several of these symptoms and have a history of mold exposure, tick-borne illness, or other environmental stressors, it’s worth considering Chronic Inflammatory Response Syndrome as a possible root cause.
The Functional Medicine Approach to CIRS
Unlike conventional medicine, which may focus on symptom suppression, functional medicine seeks to uncover and address the root causes of illness. CIRS treatment is no exception—it requires a thoughtful, stepwise protocol tailored to each patient’s biochemistry, genetics, and environment. Here’s how functional medicine addresses CIRS:
1. Identifying and Removing the Source of Biotoxins
Recovery from CIRS begins with finding and eliminating the biotoxin exposure. Environmental testing for mold (especially in homes, schools, or workplaces), treating chronic infections like Lyme disease or MARCoNS, and avoiding contaminated water sources are foundational. Without removing the root trigger, the cycle of inflammation cannot be broken.
2. Reducing Inflammation and Supporting Detoxification
The immune response in Chronic Inflammatory Response Syndrome is stuck in overdrive, and calming this storm is critical. This involves:
- Binders like cholestyramine or natural agents (activated charcoal, bentonite clay) to capture and remove toxins via the digestive tract.
- Anti-inflammatory diets, rich in vegetables, healthy fats, and low in refined sugar and processed foods.
- Liver support through targeted nutrients like N-acetylcysteine (NAC), glutathione, and milk thistle to boost detoxification.
3. Balancing Hormones and Calming the Immune System
CIRS often leads to dysregulation of the hypothalamic-pituitary-adrenal (HPA) axis, thyroid function, and blood sugar metabolism. Through hormone testing and the use of adaptogens, bioidentical hormones (if needed), and dietary support, we aim to restore balance.
At the same time, immune modulation may include low-dose naltrexone (LDN), curcumin, resveratrol, and omega-3s to reduce inflammation without suppressing immune function.
4. Healing the Brain and Nervous System
Neuroinflammation in Chronic Inflammatory Response Syndrome leads to cognitive and emotional symptoms. Healing this system requires both biological and neurological interventions:
- Omega-3 fatty acids for brain repair.
- Brain retraining programs like the Dynamic Neural Retraining System (DNRS) to rewire maladaptive neural pathways.
- Stress-reduction techniques, including meditation, deep breathing, and heart rate variability (HRV) biofeedback to lower the sympathetic stress response.
5. Ongoing Assessment and Individualized Care
No two cases of CIRS are identical. Ongoing evaluation using specialized labs (such as VCS tests, HLA typing, MMP9, TGF-β1, and VIP levels) helps monitor progress and make personalized adjustments. Functional medicine emphasizes the uniqueness of each patient’s journey and tailors treatment accordingly.
A Hopeful Path Forward
Living with Chronic Inflammatory Response Syndrome can be overwhelming, especially when others don’t believe or understand what you’re going through. But healing is possible. With the right tools, guidance, and support, the immune system can recover, inflammation can be brought under control, and wellness can be restored.
In our functional medicine practice, we combine cutting-edge diagnostics with holistic protocols to walk patients through recovery—step by step. If you recognize yourself in these symptoms or have a history of environmental exposures, we’re here to help you uncover the root causes and take the next steps toward real healing.
Take Your First Step Toward Wellness
Are you feeling constantly fatigued, foggy, anxious, or just not like yourself? Do you struggle with sleep, digestion, hormone imbalances, or chronic aches with no clear explanation? These could be signs that your body is trapped in an inflammatory cycle due to an unresolved root cause.
Addressing the foundational imbalances in your HPA axis, immune system, and detox pathways is critical to regaining your health. Don’t settle for being told your labs are “normal” when you still feel unwell.
If you’re ready to explore whether Chronic Inflammatory Response Syndrome is at the heart of your symptoms, reach out to our team. You’re not alone—and you don’t have to navigate this journey in the dark. Let us guide you back to the vitality and clarity you deserve. With the right support, Chronic Inflammatory Response Syndrome can be identified, managed, and ultimately, overcome.
Dr. Lisa Ballehr | Functional Medicine Physician | Mesa, AZ & Telemedicine Nationwide

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